Bioinformatics and Computational Biology (BCB) combine elements of computer science, information technology, mathematics, statistics, and biotechnology, providing the methodology and in silico solutions to mine biological data and processes, for knowledge discovery. In the era of molecular diagnostics, targeted drug design, translational medicine and Big Data for personalized medicine, computational methods for data analysis are essential tools for biochemistry, biology, biotechnology, pharmacology, biomedical and computer science, as well as mathematics and statistics. New areas are emerging, and relatively isolated fields are becoming current hot research areas in BCB, such as Artificial Intelligence, Quantitative Biology, Computational Vaccinology, Epidemiology and Infection Diffusion, Synthetic Biology, and Phenomics. The role of BCB in characterizing SARS-CoV-2 variants and facing the COVID-19 pandemic is just one example of how these tools can help us better prepare for such future events. This Encyclopedia comprises three sections, covering Methods, Topics, and Applications. The methodologies and algorithms underpinning BCB are described in the Methods section; Topics covers traditional areas such as phylogeny, as well as more recent areas such as translational bioinformatics, cheminformatics and environmental informatics; Applications provides guidance for commonly asked “how to” questions. Navigating the maze of confusing jargon and the plethora of software tools is often confronting for students and researchers alike. This comprehensive and unique resource provides up-to-date theory and application content to address molecular data analysis requirements, with precise definitions of terminology and lucid explanations by field experts.
Table of Contents
I. Methods- Algorithms
- Biological data models
- Computational models and languages for bioinformatics
- Artificial Intelligence and Machine Learning
- Deep Learning
- Data Mining
- Biological Networks
- Biostatistics
- Integrative Bioinformatics
- Ontology
- Pathways
- Text Mining
- Natural Language Processing
- Epidemiology and Pandemic surveillance
- Bioimage Analytics
- Cheminformatics
- Disease Informatics
- Environmental (Biome) Informatics
- Functional Genomics
- Genome Informatics
- Immunoinformatics and Vaccinology
- Molecular Phylogeny
- Proteome Informatics
- Structural Bioinformatics
- Systems and Synthetic Biology
- Translational Bioinformatics
- Bioimage Informatics
- Interactomics
- Epidemiology
- Biome mapping and ecological modelling
- Database Searching
- Drug Design
- Sequence Analysis
- Structure Analysis
- Genome Analysis
- Genome-Wise Association Studies (GWAS)
- Epigenomic Analysis
- Transcriptome Analysis
- Proteome Analysis
- Interactome Analysis
- Phylogenetic Analysis
- Vaccine Design
- Epitope Analysis
- Bioinformatics pipelines and workflows
- Metabolomics analysis
- Biomolecular engineering
- Biomarker discovery
- Network analysis